DNA barcoding of freshwater fish from different drainage systems of Telangana in Southern India

Authors

  • Boni Amin Laskar
     Freshwater Biology Regional Centre, Zoological Survey of India, Attapur, Hyderabad - 500032
  • Harikumar Adimalla
     Freshwater Biology Regional Centre, Zoological Survey of India, Attapur, Hyderabad - 500032
  • Sudipta Mandal
     Freshwater Biology Regional Centre, Zoological Survey of India, Attapur, Hyderabad - 500032
  • Shantanu Kundu
     Zoological Survey of India, Prani Vigyan Bhawan, New Alipore, Kolkata - 700052
  • Deepa Jaiswal
     Freshwater Biology Regional Centre, Zoological Survey of India, Attapur, Hyderabad - 500032
  • Dhriti Banerjee
     Zoological Survey of India, Prani Vigyan Bhawan, New Alipore, Kolkata - 700052

DOI:

https://doi.org/10.26515/rzsi/v122/i4/2022/166360

Keywords:

Deccan Peninsula, Genetic Diversity, Ichthyofauna, Morphology, Molecular Marker

Abstract

t The diversity of freshwater fish in the state of Telangana is currently recorded as 143 species under 34 families and 14 orders. The current study principally deals with the identification of fish fauna based on morphology and the generation of DNA barcode data. DNA sequence data on a partial segment of the mitochondrial cytochrome oxidase C subunit I (mtCOI) gene were generated from freshwater fishes sampled from various localities within the state of Telangana. The study identified 57 species under 41 genera, 24 families, and 11 orders. Morphological identification was concordant with the molecular basis of taxon assignment, where 57 OTU (Operational Taxonomic Units) correspond to 57 species, and no BIN discordance was found in the dataset. The present phylogenetic tree discriminates all the studied species based on the partial mtCOI gene. The study contributed DNA sequence data for many of the important species for the first time to the global database

Downloads

Download data is not yet available.

Downloads

Published

2023-08-25

How to Cite

Laskar, B. A., Adimalla, H., Mandal, S., Kundu, S., Jaiswal, D., & Banerjee, D. (2023). DNA barcoding of freshwater fish from different drainage systems of Telangana in Southern India. Records of the Zoological Survey of India, 122(4), 371–382. https://doi.org/10.26515/rzsi/v122/i4/2022/166360

Issue

Volume 122, Issue 4, 2022

Section

Articles
Crossref
Scopus
Google Scholar
Europe PMC

References

April, J., Mayden, R.L., Hanner, R.H. and Bernatchez, L. 2011. Genetic calibration of species diversity among North America’s freshwater fish. Proc. Natl. Acad. Sci. USA, 108: 10602-10607. https://doi.org/10.1073/pnas.1016437108

Barman, A.S., Singh, M., Singh, S.K., Saha, H., Singh, Y.J., et al. 2018. DNA barcoding of freshwater fish of Indo-Myanmar biodiversity hotspot. Sci. Rep., 8: 8579. https://doi.org/10.1038/s41598-018-26976-3

Barman, R.P. 1993. Freshwater fish. In: State Fauna Series 5, Fauna of Andhra Pradesh, Pt-1, 89-334.

Berra, T.M. 2007. Freshwater fish distribution. Chicago (USA): The University of Chicago Press. https://doi.org/10.7208/ chicago/9780226044439.001.0001

Bhattacharjee, M.J., Laskar, B.A., Dhar, B. and Ghosh, S.K. 2012. Identification and Re-Evaluation of Freshwater Catfish through DNA Barcoding. PLoS One, 7: e49950. https://doi.org/10.1371/journal.pone.0049950

Broussonet, P.M.A. 1782. Ichthyologia, sistens piscium descriptiones et icones. Decas I. London. 49 unnum. pages, incl. i-iv., Unnum. Pls. 1-11.

Chandra, K., Raghunathan, C. and Sheela, S. 2020. Animal Discoveries-2019: New Species and New Records. Director, Zoological Survey of India, Kolkata, 1-184 pp.

Chen, W., Ma, X., Shen, Y., Mao, Y. and He, S. 2015. The fish diversity in the upper reaches of the Salween River, Nujiang River, revealed by DNA barcoding. Sci Rep., 5: 17437. https://doi.org/10.1038/srep17437

Collins, R.A., Armstrong, K.F., Meier, R., Yi, Y. and Brown, S.D., et al. 2012. Barcoding and border biosecurity: identifying cyprinid fish in the aquarium trade. PLoS One, 7: e28381. https://doi.org/10.1371/journal.pone.0028381

Conte-Grand, C., Britz, R., Dahanukar, N., Raghavan, R., Pethiyagoda, R., et al. 2017. Barcoding snakeheads (Teleostei, Channidae) revisited: discovering greater species diversity and resolving perpetuated taxonomic confusions. PLoS One, 12: e0184017. https:// doi.org/10.1371/journal.pone.0184017

Datta, A.K. and Karmakar, A.K. 1980. Clupisoma bastari sp. nov. (Pisces: Schilbeidae) from Bastar, Madhya Pradesh, India. Bulletin of the Zoological Survey of India, 2(2-3): 193-196.

Fricke, R. 2020. Eschmeyer’s catalog of fish. http://researcharchive.calacademy.org/research/ichthyology/catalog/fishcatmain.asp

Hubert, N., Hanner, R., Holm, E., Mandrak, N.E., Taylor, E., et al. 2008. Identifying Canadian freshwater fish through DNA barcodes. PLoS One, 3: e2490. https://doi.org/10.1371/journal.pone.0002490

Jayaram, K.C. 1999. The freshwater fish of Indian region. Narendra publishing house, Delhi. 551p.

Kerr, J., Sugar, A. and Packer, L. 2000. Indicator Taxa, Rapid Biodiversity Assessment, and Nestedness in an Endangered Ecosystem. Conservation Biology, 14: 1726-1734. https://doi.org/10.1046/j.1523-1739.2000.99275.x

Khedkar, G.D., Jamdade, R., Naik, S., David, L. and Haymer, D. 2014. DNA barcodes for the fish of the Narmada, one of India’s longest rivers. PLOS One, 9: e101460. https://doi.org/10.1371/journal.pone.0101460

Kundu, S., Chandra, K., Tyagi, K., Pakrashi, A., and Kumar, V. 2019a. DNA barcoding of freshwater fish from Brahmaputra River in Eastern Himalaya biodiversity hotspot. Mitochondrial DNA B: Resour., 4: 2411-2419. https://doi.org/10.1080/23802359.2019.16 37290

Kundu, S., Tyagi, K., Pakrashi, A., Kumar, B., and Laishram, K., et al. 2019b. DNA barcoding of freshwater fish from the transboundary river of Indo-Bhutan: Multiple clades and cryptic diversity. Mitochondrial DNA B: Resour., 4: 2527-2532. https://doi.org/10.1080 /23802359.2019.1640079

Lakra, W.S., Verma, M.S., Goswami, M., Lal, K.K., Mohindra, V., et al. 2011. DNA barcoding of Indian marine fish. Mol. Ecol. Resour., 11: 60-71. https://doi.org/10.1111/j.1755-0998.2010.02894.x

Lakra, W.S., Singh, M., Goswami, M., Gopalakrishnan, A., Lal, K.K., et al. 2016. DNA barcoding Indian freshwater fish. Mitochondr DNA A DNA Mapp Seq Anal., 27: 4510-4517. https://doi.org/10.3109/19401736.2015.1101540

Laskar, B.A., Kumar, V., Kundu, S., Darshan, A., Tyagi, K., et al. 2018. DNA barcoding of fish from River Diphlu within Kaziranga National Park in northeast India. Mitochondr DNA A DNA Mapp Seq Anal., 30: 126-134. https://doi.org/10.1080/24701394.2018 .1463373

Laskar, B.A., Bhattacharjee, M.J., Dhar, B., Mahadani, P., Kundu, S., et al. 2013. The species dilemma of Northeast Indian Mahseer (Actinopterygii: Cyprinidae): DNA barcoding in clarifying the riddle. PLoS One, 8: e53704. https://doi.org/10.1371/journal. pone.0053704

Laskar, B.A., Kumar, V., Kundu, S., Tyagi, K. and Chandra, K. 2018. Taxonomic quest: validating two Mahseer fish (Actinopterygii: Cyprinidae) through molecular and morphological data from biodiversity hotspots in India. Hydrobiologia, 815:113-124. https:// doi.org/10.1007/s10750-018-3555-6

Laskar, B.A., Das, K.C., Dhar, B., Bhattacharjee, M.J. and Ghosh, S.K. 2012. Biodiversity: Inventorying and Monitoring. In: A text book on DNA Barcoding. Published by: Books Space, Kolkata.

Laskar, B.A., Adimalla, H., Kundu, S., Jaiswal, D. and Chandra, K. 2022. DNA barcoding of a lesser-known catfish, Clupisoma bastari (Actinopterygii: Ailiidae) from Deccan Peninsula, India. Journal of Threatened Taxa, 14(8): 21605–21611. https://doi. org/10.11609/jott.6900.14.8.21605-21611

Lavoue, S., Ghazali, S.Z., Jamaluddin, J.A.F., Nor, S.A.M. and Zain, K.M. 2020. Genetic evidence for the recognition of two allopatric species of Asian bronze featherback Notopterus (Teleostei, Osteoglossomorpha, Notopteridae). Zoosyst. Evol., 96: 449-454. https:// doi.org/10.3897/zse.96.51350

Laxmappa, B. and Bakshi, R.R. 2016. A Checklist of fish of Telangana State, India. Int. J. Fish. Aquat. Stud., 4: 35-42.

Mabragana, E., Diaz de Astarloa, J.M., Hanner, R., Zhang, J. and Gonzalez Castro, M. 2011. DNA Barcoding Identifies Argentine Fish from Marine and Brackish Waters. PLoS One, 6: e28655. https://doi.org/10.1371/journal.pone.0028655

Narayan Rao, C.R. 1920. Some new species of cyprinoid fish from Mysore. Annals and Magazine of Natural History (Series 9), 6(31): 45-64.

Prasad, K.K. and Srinivasulu, C. 2021. A checklist of fishes of Telangana State, India. Journal of Threatened Taxa, 13(5): 18324–18343. https://doi.org/10.11609/jott.6714.13.5.18324-18343.

Pallas, P.S. 1769. Spicilegia Zoologica quibus novae imprimis et obscurae animalium species iconibus, descriptionibus atque commentariis illustrantur. Berolini, Gottl. 1(7): 1-42.

Rema Devi, K. and Indra, T.J. 2003. An updated checklist of ichthyofauna of Eastern Ghats. Zoos’ Print Journal, 18: 1067-1070. https:// doi.org/10.11609/JoTT.ZPJ.18.4.1067-70

Ronquist, F. and Huelsenbeck, J.P. 2003. MrBayes 3: bayesian phylogenetic inference under mixed models. Bioinformatics, 19: 1572- 1574. https://doi.org/10.1093/bioinformatics/btg180

Sambrook, J. and Russell, D.W. 2001. Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory Press. Cold Spring Harbor, New York.

Steinke, D., Zemlak, T.S., and Hebert, P.D.N. 2009. Barcoding nemo: DNA-based identifications for the ornamental fish trade. PloS One, 4: e6300. https://doi.org/10.1371/journal.pone.0006300 Stern, D.B., Castro Nallar, E., Rathod, J. and Crandall, K.A. 2017. DNA Barcoding analysis of seafood accuracy in Washington, D.C. restaurants. PeerJ., 5: e3234. https://doi.org/10.7717/peerj.3234

Talwar, P.K., Jhingran, A. 1991. Inland fish of India and adjacent countries. Oxford and IBH Publishing, New Delhi. 1 and 2: 1158 p.

Tamura, K., Stecher, G., Peterson, D., Filipski, A. and Kumar, S. 2013. MEGA6: molecular evolutionary genetics analysis version 6.0. Mol. Biol.Evol., 30: 2725-2729. https://doi.org/10.1093/molbev/mst197

Ward, R.D., Hanner, R. and Hebert, P.D.N. 2009. The campaign to DNA barcode all fish, FISH-BOL. J Fish Biol., 74: 329-356. https:// doi.org/10.1111/j.1095-8649.2008.02080.x

Ward, R.D., Zemlak, T.S., Innes, B.H., Last, P.R. and Hebert, P.D.N. 2005. DNA barcoding of Australia’s fish species. Philos. Trans. R. Soc. Lond. B Biol. Sci., 360: 1847-1857. https://doi.org/10.1098/rstb.2005.1716

Willette, D.A., Simmonds, S.E., Cheng, S.H., Esteves, S. and Kane, T.L., et al. 2017. Using DNA barcoding to track seafood mislabeling in Los Angeles restaurants. Conserv. Biol., 31: 1076-1085. https://doi.org/10.1111/cobi.12888

Wong, L.L., Peatman, E., Lu, J., Kucuktas, H., He, S., et al. 2011. DNA barcoding of catfish: species authentication and phylogenetic assessment. PloS One, 6: e17812. https://doi.org/10.1371/journal.pone.0017812

Yang, L., Arunachalam, M., Sado, T., Levin, B.A., Golubtsov, A.S., et al. 2012. Molecular phylogeny of the cyprinid tribe Labeonini (Teleostei: Cypriniformes). Mol. Phylogenet. Evol., 65: 362-379. https://doi.org/10.1016/j.ympev.2012.06.007

Yang, L., Sado, T., Vincent-Hirt, M., Pasco-Viel, E., and Arunachalam, M., et al. 2015. Phylogeny and polyploidy: Resolving the classification of cyprinine fish (Teleostei: Cypriniformes). Mol. Phylogenet. Evol., 85: 97-116. https://doi.org/10.1016/j. ympev.2015.01.014

Most read articles by the same author(s)

<< < 1 2 3 4 > >>